I am in the middle of a similar effort. Am building a platform on which the Thetford will be secured, which in turn is secured between the bulkheads and on cross members secured in the same bolt positions of the old head, plus one, which on mine cross the 24" span of the entire locker at 6" increments. The platform will lift out in order to access the space below, nicely separated into 6" by 12" storage areas (about 3" deep), as well as additional depth in the front 4" which will become a bin of sorts - I saved the old backing for the locker to rebuild a front which matches the opposite wet locker in height, and expect to insert a similar horizontal piece as is found on the front of the wet locker as a brace. I expect to use this space for three canvas tool rolls (with tools of course). The bin will hold all the random small clamps, etc. securely without too much fuss.
To your question - feet may be easily rested on the horizontal piece. All closes up nicely in the original space with original doors. As an aside I will build a drop down top behind the head for additional nav space with cubbies behind for nav tools, which gets me to the hardest part of the job, installing an additional LED light in there.
Mind you, I've only removed the head and taken measurements thus far preparing to build in the off season...
FYI on holding tank. Been going back and forth on how to best use that space. I've been a bit concerned about putting anything potable in there, and settled on using same space for a locker for the heaviest stuff, especially anchor chain, in order to keep that weight as low and as centered as possible. Am also going to secure a larger volume fixed pump on the underside of the hatch in the sole there for emergencies...flip the hatch over, slip end of hose already led into the deepest part of the bilge just aft, throw the exit hose into the cockpit, and go at it. Noodling whether there might be a way to convert the existing head pumpout (which of course now is unnecessary) into the exit for this emergency pump so that in such emergency it would be possible to pump out with the cabin secured (ie. no boards removed to cockpit). The issue is how to lead the hose without having to follow the same path as the existing head hose, which I feel may be too long for a pump, assuming the pump is even able to lift the water up the 5' to the level of the head pump out.